Welcome to Kevin Chen's group web page.
- Past travel:
- April 13, National Institutes of Health
- May 6, New York University
- May 11, UC San Diego
- May 19, Mount Sinai School of Medicine
- Aug 21, Stockholm University
- Aug 24, University of Copenhagen
- Sep 11, Stony Brook University
- Oct 21, University of Waterloo
- Nov 9, Temple University
- Upcoming travel:
- Nov 16, 2015. We're looking for one PhD student and one postdoc in computer science or computational biology to join our group. Please send email to Kevin Chen if you're interested.
- Oct 14, 2015. Code for Spectacle-Tree is now available here
- Oct 7, 2015. We'll be presenting our spectral learning work at the Cold Spring Harbor Laboratory conference, Probabilistic Modeling in Genomics, Oct 14-17, 2015.
- Sep 4, 2015. Our Spectacle-Tree paper with Kamalika Chaudhuri's group has been accepted to NIPS 2015.
- Aug 19. 2015. Kevin Chen will give an invited talk at the NIPS Workshop on Non-convex Optimization for Machine Learning: Theory and Practice in Montreal, Canada (Dec 11-12, 2015)
- Aug 14, 2015. Kevin Chen will be on the RECOMB 2016 (Santa Monica, CA, April 17-21) Program Committee.
- Aug 11, 2015. Rutgers will have a rank-open faculty search in computational biology in 2015-2016 with a preference for an Assistant Professor.
- Jul 31, 2015. Spectacle annotations for all Roadmap Epigenomics Project samples are available on the Data and Software tab. There are two annotations available - one where Spectacle is trained on all samples together, and one where Spectacle is trained on each sample individually.
- Jun 11, 2015. Please click on the Data and Software tab to access our chromatin state annotations (e.g. enhancer, promoter etc.) of the ENCODE Tier 1 and Tier 2 cell lines.
- Jun 7, 2015. New preprint on arXiv. Spectral Learning of Large Structured HMMs for Comparative Epigenomics.
- Jun 1, 2015. We're pleased to welcome Albert Kuo (U Chicago Math/Statistics) and Eli Ben-Michael (Columbia Computer Science/Statistics) to the group for the summer.
- Apr 17, 2015. Jimin Song will be presenting her work at the NY Epigenomics Symposium on May 4 at New York Genome Center.
- Apr 8, 2015. We're very pleased to welcome two undergrads, Yuwen Wang (Math/Statistics), and Cassandra Burdziak (Biomathematics) to the group.
- Apr 7, 2015. Kevin Chen has been promoted to Associate Professor with Tenure.
- Jan 23, 2015. Our manuscript describing our software for learning chromatin states, Spectacle, is in press at Genome Biology.
- Sep 29, 2014. Our Drosophila piRNA paper is in advance access at Genome Biology and Evolution.
- Aug 28, 2014. Liyang Diao has successfully defended her PhD thesis and moved on to Yale Biostatistics.
- Aug 1, 2014. Our MixMir microRNA manuscript has been published by Nucleic Acids Research
- Jun 24, 2014. Our human piRNA paper with Jinchuan Xing's group is in press at BMC Genomics
- Mar 18, 2014. Our paper with the group of Marc Friedlander and Xavier Estivill (Centre de Regulació Genòmica, Barcelona), "Evidence for the biogenesis of more than 1,000 novel human microRNAs", is in press at Genome Biology
Feb 14, 2014. Our spectral learning for chromatin state annotation manuscript has been posted to bioRxiv.